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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaatttcatttatattattaactttgcttgacttcacaatattattataatttgtagaaataaaatataagtgatatgaatcttttgcatttttatgcaacagAAAAGACTTTGCAACATATGCTGAAATATGTTTTCAGAAATTTGGAGATAGAGTGAAACATTGGATCACTTTCAATGAGCCTCATACATTTGCTATGATG

Basic information

species Glycine max
transcript GLYMA01G06980.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G06980.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G26560.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgaaatttcatttatattattaactttgcttgacttcacaatattattata-atttgtagaaataaaatataagtgat--atgaatcttt-tgcatttttatgcaacagAAAAGACTTTGCAACATATGCTGAAATATGTTTTCAGAAATTTGGAGATAGAGTGAAACATTGGATCACTTTCAATGAGCCTCATACATTTGCTATGATG
|||  ||     |   | |  || | | ||  |  | |    || | ||||| |  |    |||||  || | |||       ||| || | | | |  |||| || |   |||| || |||||| | ||||| ||  | ||||| |||| |||||||||||||||||| || |||||||| ||||| ||||| || || || || ||    
gtaataatccataccaaaaccat-atcattaatc-attcagtaaaactattacatgtacacagaaactaattttaaaaaggcaatgcatgtatgtacccttttttgta---gAAATGATTTTGCAGCGTATGCGGAGGTTTGTTTCCAGAGATTTGGAGATAGAGTGAAGCACTGGATCACGTTCAACGAGCCACACACGTTCGCGATACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgtagaaataaaatataagtgatatgaatcttttgcatttttatgcaacagAAAAGACTTTGCAACATATGCTGAAATATGTTTTCAGAAATTTGGAGATAGAGTGAAACATTGGATCACTTTCAATGAGCCTCATACATTTGCTATGATG
                                tcttttgcattttt  CT-rich tract
         aaataaaatataagtg  TA-rich tract