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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttcttcaaagaaactaattaatcatatagtgcttctgaatcctgttgcgtatatgtaacatgttctgtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTCCAGACTACATAGTTCTGAAATCGTTGGATACTGATGGTATCCGTATAAT

Basic information

species Glycine max
transcript GLYMA01G06630.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193646921|gb|FK589194.1|FK589194
EST:     CATCTGGTTTACTTCAAGATATGAGGAAAGATG                         ATTATGCAATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
genomic: CATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: gi|18848595|gb|BM567752.1|BM567752
EST:     ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATG                         ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
genomic: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: gi|193593283|gb|FK545801.1|FK545801
EST:     CATCTGGTTTACTTCAAGATATGAGGAAAGATG                         ATTATGCAATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
genomic: CATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: gi|192321870|gb|FK013234.1|FK013234
EST:     ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATG                         ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
genomic: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: gi|254324255|gb|GR840572.1|GR840572
EST:     ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATG                         ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
genomic: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: gi|22930913|gb|BU548052.1|BU548052
EST:     CAAGATATGAGGAAAGATG                         ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
genomic: CAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatatagtgcttctgaatcctgttgcgtatatgtaacatgttctgtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTCCAGACTACATAGTTCTGAAATCGTTGGATACTGATGGTATCCGTATAAT
                               atgtaac  putative branch site (score: 3)
                            tatatgtaa  TA-rich tract