1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacattctttttctcttgtttctgatttatttaacattgaaatattgaacacttttatgttttattaagttgactgactcaactggttatatctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCTATTCTTGCCAGTGGTTTGCCCACATCAGAGGATTCAGAGC
species | Glycine max |
transcript | GLYMA01G05860.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGATGGGAAGCACATAACCTCGTTTGCTTTCCGTGAA ACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAAEST: gi|4291525|gb|AI441774.1|AI441774
genomic: GTTGATGGGAAGCACATAACCTCGTTTGCTTTCCGTGAAgtacattctt ... tatatctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAA
EST: TCCAGATGACAGTTGATGGGAAGCACATAACCTCGTTTGCTTTCCGTGAA ACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAAEST: gi|254325270|gb|GR838151.1|GR838151
genomic: TCCAGATGACAGTTGATGGGAAGCACATAACCTCGTTTGCTTTCCGTGAAgtacattctt ... tatatctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAA
EST: TCCAGATGACAGTTGATGGGAAGCACATAACCTCGTTTGCTTTCCGTGAA ACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAA
genomic: TCCAGATGACAGTTGATGGGAAGCACATAACCTCGTTTGCTTTCCGTGAAgtacattctt ... tatatctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAA
tattgaacacttttatgttttattaagttgactgactcaactggttatatctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCTATTCTTGCCAGTGGTTTGCCCACATCAGAGGATTCAGAGC
gactgac putative branch site (score: 2)
aacacttttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattctttttctcttgtttctgatttatttaacattgaaatattgaacacttttatgttttattaagttgactgactcaactggttatatctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCTATTCTTGCCAGTGGTTTGCCCACATCAGAGGATTCAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT