1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtactcaatgcatgttctatttttactttttaattatttttagcaagtgagggaattacagtttccctgatattgggtggacatgctttgtatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
species | Glycine max |
transcript | GLYMA01G03720.6 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGA GAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAGEST: gi|120532659|gb|EH260792.1|EH260792
genomic: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGAgtacgtatct ... tatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
EST: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGA GAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAGEST: gi|192296129|gb|FG989489.1|FG989489
genomic: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGAgtacgtatct ... tatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
EST: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGG GAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAGEST: gi|6481602|gb|AW200873.1|AW200873
genomic: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGAgtacgtatct ... tatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
EST: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGA GAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAGEST: gi|16995716|gb|BM085088.1|BM085088
genomic: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGAgtacgtatct ... tatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
EST: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGA GAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAGEST: gi|298168878|gb|HO009808.1|HO009808
genomic: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGAgtacgtatct ... tatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
EST: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGA GAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAGEST: gi|6070604|gb|AW099991.1|AW099991
genomic: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGAgtacgtatct ... tatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
EST: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGA GAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGGTTTATTCACTTTAAGAATGAGAAATTTGAgtacgtatct ... tatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
agtgagggaattacagtttccctgatattgggtggacatgctttgtatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
ccctgat putative branch site (score: 4)
tatttttc putative PPT
tttgtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcaatgcatgttctatttttactttttaattatttttagcaagtgagggaattacagtttccctgatattgggtggacatgctttgtatttttcagGAAAAATCCTTATCTATATGGTGAGCTTGCCAAAGGCCAGAGCCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - gtgaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct