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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttcacttccttcctgcctgaccctcttctttctttccattacattttgctttgctaacacttttacttaatttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACCGTGACATCACTTGCTAAGTCTGCGGATGGTTCGCATTTCCTTACTGGCT

Basic information

species Glycine max
transcript GLYMA01G03610.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03610.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 3
------------gtgatttcacttccttcctgcctgaccctcttctttctttccattacattttgctttgctaacacttttacttaattt----gtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACCGTGACATCACTTGCTAAGTCTGCGGATGGTTCGCATTTCCTTACTGGCT
             |  ||  | |   ||   ||  |||      |||  ||| |  ||  | ||  |    | |   || |  |    |       ||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||| || ||||||||| | ||  |||  |||||||| |||||  |||||||||
taacctgtggttctagttgaaatattttaaagcaagacttcagccttgattttc--tatttgttattgaattcaagtttctggtcctctctcaaacttgcagACGGGGAAACTGCTTAAAGAGTCAGACAAGGAAACCGGCCACAAAAAGACAGTAACATCACTTTCAAAAGCTGTAGATGGTTCACATTTTGTTACTGGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726207|gb|BW659572.1|BW659572
EST:     CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG                         ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
EST: gi|208147287|gb|GD944954.1|GD944954
EST:     CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG                         ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
EST: gi|19934429|gb|BQ079459.1|BQ079459
EST:     CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG                         ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
EST: gi|18717773|gb|BM522996.1|BM522996
EST:     CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG                         ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGC
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctttccattacattttgctttgctaacacttttacttaatttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACCGTGACATCACTTGCTAAGTCTGCGGATGGTTCGCATTTCCTTACTGGCT
                                            tttgttt  CT-rich tract
                                  ttttacttaatttgtt  TA-rich tract