Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatgtcttagtagctgaaattatatcaatcgtgtttcatatgtttgtttgtacaatagaattgagtaaatgttgtctaatatttccttgattttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTT

Basic information

species Glycine max
transcript GLYMA01G03540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03540.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os06g27870.1 (Oryza sativa), 3'ss of exon 2
---------------------agatgtctt-agtagctgaaattatatc-aatcgtgttt---catatgtttgtttg-tacaatagaattgagtaaatgttgtctaatatttccttgattttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTT-------------------------------------------------
                     | || | || ||     | ||   ||||   |  |||     ||| | |||| |   || | |  ||||||  | |||   |    | | | |||| | |   |||||  |||| ||||| |||||||||||||||||||||||||| ||| |  ||||   |||||| || |||||   | ||||||||||||||||||||||||                                                 
gtaagacgactcattacagagaaatattttcagcgaaaggaagactatctggttatgtagaaacatgtatttgctgactaaagtgcaattgaacagatggcttgatctctgttcttgttctctgcagaaaagcaaaataaagcctgttcatgttgttgatgttcctggtcatgcagGGCTCAAACCCAAGCTTGATGAAGTCCTGCCTCAAGCAGCTGGGATAGTTTTTGCTGTTGATGCTCAAGATTTCTTGTCCACCATGCAAGTCGTTGCAGA

upper sequence: GLYMA01G03540.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 3'ss of exon 3
------------------------------agatgtcttagt---agctgaaattatatcaatcgtgtttcatatgtttgtttgtacaatagaattgagtaaatgttgtctaatatttccttgattttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTT
                              | |  ||||  |   |  |||||  |   | ||| ||||  |||      |   |    | || |  | ||  | |||    || ||    |    |   ||||  |||||  |||||||||||||||||||||| |||||||| ||| |  ||||   ||||||||| |||||   | |||||||||||||||| |||||||
gtaaggcaacttcttagagacaaatattttaaacatcttgatatgaaatgaaaggaagactatcctgttatatagaaccatgcatttgct-gactacaata--tattgatgcatgttcttgttcgctctgcagAGAGGCAAAGTAAAACCTGTTCATGTTGTTGACGTTCCTGGTCATGCAAGGCTCAAACCCAAACTTGATGAAGTCCTGCCTCAAGCAGCTGGAATAGTTT

upper sequence: GLYMA01G03540.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G175054_T01 (Zea mays), 3'ss of exon 6
agatgtcttagtagctgaaattatatcaatcgtgtttcatatgtttgtttgtacaatagaattgagtaaatgttgtctaat----atttccttgattttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTT
|| | |  |||||    ||||  | |     || | |  |         || | |     | || |  | |  ||   ||     || |  |   |     ||||| | |||  |||||||||| |||||| ||||||||||||| ||| || ||||   ||||||||| |||||   | ||||| |||  |||| | | || |
agttctgctagtaatgtaaatagtttt----gtttcttgtgaaaaaacatgcatatcctgactgcgatatttctgctaaaccttcatgttgtccttccctgcagAAAGACAAAGTAAAACCTGTGCATGTTATTGATGTTCCTGGTCATGCTAGGCTCAAACCCAAACTTGATGAAGTCCTGCCTAAAGTTGCTGCGGTTGTCT

upper sequence: GLYMA01G03540.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0127g00270.t01 (Vitis vinifera), 3'ss of exon 4
--agatgtcttagtagctgaaattatatca-atcgtgtttcatatgtttgtttgtaca-atagaattgagtaaatgttgtctaatatttccttgattttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTT
  |  ||    | |  |     || ||||  |  ||  || |||| |   ||  || | | | | |||| | ||   ||  |  | ||||  |    || ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
gtacttgcaacattttcctctcttctatcttaatgttgtttatatatggattgttaaatacaaacttgattgaag--tgagtgctctttctat--ccttgacagAAGGGTAAAATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGTCTTCGACCCAAACTGGATGAGTTCTTGCCTCAGGCAGCTGGGATAGTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208058942|gb|GD858974.1|GD858974
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACA-GG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|298196763|gb|HO041506.1|HO041506
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGC
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGC
EST: gi|193680678|gb|FK624038.1|FK624038
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|17021044|gb|BM092078.1|BM092078
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|298171167|gb|HO016199.1|HO016199
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|7925655|gb|AW831681.1|AW831681
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|208168717|gb|GD968735.1|GD968735
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|20497759|gb|BQ272689.1|BQ272689
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|21639000|gb|BM140046.1|BM140046
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|9258120|gb|BE346267.1|BE346267
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AATGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATACTCTG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193423340|gb|FK389847.1|FK389847
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAA-CAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|208335440|gb|GE133385.1|GE133385
EST:     CAATGGAGCCTAATGAAGGCAC-TTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|208281372|gb|GE073730.1|GE073730
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193327071|gb|FK291146.1|FK291146
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAA-CAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|20497767|gb|BQ272697.1|BQ272697
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACGAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|192319496|gb|FK005936.1|FK005936
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|207756379|gb|GD729546.1|GD729546
EST:     GGAGCCTAATGAAGGCACTTTTATTACTTACAACAAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: GGAGCCTAATGAAGGCACTTTTATT-CTT-C-AC-AACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|298189852|gb|HO038255.1|HO038255
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|213597292|gb|DB962082.1|DB962082
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|9258144|gb|BE346291.1|BE346291
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AATGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193626942|gb|FK574062.1|FK574062
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|208336730|gb|GE135134.1|GE135134
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193591619|gb|FK548666.1|FK548666
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193544705|gb|FK501672.1|FK501672
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193599449|gb|FK552434.1|FK552434
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|208231783|gb|GE031270.1|GE031270
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193629144|gb|FK578092.1|FK578092
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|193467439|gb|FK432552.1|FK432552
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|298182273|gb|HO026448.1|HO026448
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTC
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTC
EST: gi|192319497|gb|FK005937.1|FK005937
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|12691346|gb|BG157682.1|BG157682
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAA
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAA
EST: gi|298165762|gb|HO008733.1|HO008733
EST:     CA-TGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|207776271|gb|GD749592.1|GD749592
EST:     CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: gi|207713636|gb|GD695311.1|GD695311
EST:     CCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG                         AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtacaatagaattgagtaaatgttgtctaatatttccttgattttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTT
                              tctaatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agatgtcttagtagctgaaattatatcaatcgtgtttcatatgtttgtttgtacaatagaattgagtaaatgttgtctaatatttccttgattttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGATAGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - gtagctg
- - - - - - - - - - - - - - - - - - -catatgt
- - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtc