1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgctttattaccgtggttttccctctttattttattagttgttcgcagtgtttccctttcaacccttgatgtatttagttatgtctttctctaatatatagGTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCTTTCATCCCACACAATGAAGAGTTTTACCTTAACATTGTCTCCGAGAGAC
species | Glycine max |
transcript | GLYMA01G03530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATTTTGCACAAGTTGTTTCGTTTGTGAAGGAGCGTCTTGGAAAAGAG GTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCTEST: gi|213600039|gb|DB966499.1|DB966499
genomic: TGGATTTTGCACAAGTTGTTTCGTTTGTGAAGGAGCGTCTTGGAAAAGAGgtgctttatt ... taatatatagGTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCT
EST: TGGATTTTGCACAAGTTGTTTCGTTTGTGAAGGAGCGTCTTGGAAAAGAG GTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCTEST: gi|33390369|gb|CA853564.1|CA853564
genomic: TGGATTTTGCACAAGTTGTTTCGTTTGTGAAGGAGCGTCTTGGAAAAGAGgtgctttatt ... taatatatagGTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCT
EST: TGGATTTTGCACAAGTTGTTTCGTTTGTGAAGGAGCGTCTTGGAAAAGAG GTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCT
genomic: TGGATTTTGCACAAGTTGTTTCGTTTGTGAAGGAGCGTCTTGGAAAAGAGgtgctttatt ... taatatatagGTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCT
agtgtttccctttcaacccttgatgtatttagttatgtctttctctaatatatagGTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCTTTCATCCCACACAATGAAGAGTTTTACCTTAACATTGTCTCCGAGAGAC
ctctaat putative branch site (score: 3)
ttatgtctttctct CT-rich tract
tttctctaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctttattaccgtggttttccctctttattttattagttgttcgcagtgtttccctttcaacccttgatgtatttagttatgtctttctctaatatatagGTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCTTTCATCCCACACAATGAAGAGTTTTACCTTAACATTGTCTCCGAGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA