1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gtgtagttccattcaccgttcacttgattttaaacatatgtattatttggagctcgccattttacatttaccaaataacaaaatacttttgcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAG
species | Glycine max |
transcript | GLYMA01G02480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAA GCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAEST: gi|192297389|gb|FG990681.1|FG990681
genomic: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
EST: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAA GCCAAATAAAGGAG-CTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAEST: gi|209701313|gb|BW655908.1|BW655908
genomic: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
EST: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAA GCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
genomic: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
tttggagctcgccattttacatttaccaaataacaaaatacttttgcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAG
aaataac putative branch site (score: 2)
cttttgccttt putative PPT
attttacatttaccaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtagttccattcaccgttcacttgattttaaacatatgtattatttggagctcgccattttacatttaccaaataacaaaatacttttgcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAAGAGAAAGTTTTAACAAAATTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - ccattca
- - - - - - - - - - cacttga
- - - - - - - - - - - - - - - - - catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa