1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagttgtacttctttagtgactacctgtgtgtttttgtttctaatttttattacttatgcatacaatacttaagatatggacttctcttctggcttgcagCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGTGCACTTCTTGTGGAATCCAGAAG
species | Glycine max |
transcript | GLYMA01G01960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAG CTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGEST: gi|7686678|gb|AW757256.1|AW757256
genomic: AGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAGgtggctaata ... tggcttgcagCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCG
EST: AGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAG CTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGEST: gi|9564916|gb|BE474425.1|BE474425
genomic: AGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAGgtggctaata ... tggcttgcagCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCG
EST: AGGGAAACTGCTTACACTCCTTTTGTTCC-CAAGCACTTCTTC-ATCCA- CTATACAGCCAGTGAAGTAGACATTGEST: gi|192310953|gb|FK001590.1|FK001590
genomic: AGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAGgtggctaata ... tggcttgcagCTATACAGCCAGTGAAGTAGACATTG
EST: AGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAG CTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAG
genomic: AGGGAAACTGCTTACACTCCTTTTGTTCCGCAAGCACTTCTTCCATCCAGgtggctaata ... tggcttgcagCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAG
ttttattacttatgcatacaatacttaagatatggacttctcttctggcttgcagCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGTGCACTTCTTGTGGAATCCAGAAG
cttctcttctggctt CT-rich tract
aatacttaagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttgtacttctttagtgactacctgtgtgtttttgtttctaatttttattacttatgcatacaatacttaagatatggacttctcttctggcttgcagCTATACAGCCAGTGAAGTAGACATTGGTTCTGATAAGACTCCAGAACAGCGTGCACTTCTTGTGGAATCCAGAAG
- - - - - - - - gtgacta
- - - - - - - - - - - -cctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataca