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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatggtgtttatattgaaatagtttttcctctttacttgcgtagtttaaacaggttgttgttaaatgtttctggatataatgtccgtgttacctttccatttcaagGTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTG

Basic information

species Glycine max
transcript GLYMA01G01270.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g44360.1 (Oryza sativa), 3'ss of exon 3
gtaagttgatggtgtttatattgaaatagtttttcctctttacttgcgtagtttaaacaggttgttgttaaatgtttctggatataatgtccgtgttacctttccatttcaagGTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTG
        ||      || || ||   ||| ||   |  | | |   |||    ||| ||  ||| || | | |  |       | ||  || || |     | |  ||  ||||||||||| || ||||| ||||| || ||||| |||||||||||||| |||||||| || ||| | |||||
-------tatcaaaagtagatggagggagtattgtgtaatca-tgatgta----aaatagaatgt-gtaatacgcctacttggctgattcccttgctgttgcttctgttttagGTATCCCCTTGGCCGTGTGATTGGCGGCACTGTGTATCCTGGTTTGACATTGACAGCTGGAACCATTTGGTG

upper sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 3
gtaagttgatggtgtttatattgaaatagtttttcctctttacttgcgtagtttaaacaggttgttgttaaatgtttctggatataatgtccgtgttacctttccatttcaagGTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTG
                                 |    ||| |  |   |  || ||    |  |||||      || |   |||  |  |  ||| ||||      ||  |||||||| || || ||||| |||||||| ||||||||||||||||||||  | || || || ||  |||||||
--------------------------------gtaacatttccaagaaca-cttgaatctatccttgttttccagttatttctatgctcac--tgtcacct----gcttttagGTATCCTCTTGGGCGTGTTATTGGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724609|gb|BW677716.1|BW677716
EST:     ACAAAGAATGGGATATACGATTTCTGGAACTGGTTTGATGATCGAACTTG                         GTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTT
genomic: ACAAAGAATGGGATATACGATTTCTGGAACTGGTTTGATGATCGAACTTGgtaagttgat ... ccatttcaagGTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTT
EST: gi|17154085|gb|BM144018.1|BM144018
EST:     ACAAAGAATGGGATATACGATTTCTGGAACTGGTTTGATGATCGAACTTG                         GTATCCCCTCGGGCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTT
genomic: ACAAAGAATGGGATATACGATTTCTGGAACTGGTTTGATGATCGAACTTGgtaagttgat ... ccatttcaagGTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTT
EST: gi|213590312|gb|DB963861.1|DB963861
EST:     ACAAAGAATGGGATATACGATTTCTGGAACTGGTTTGATGATCGAACTTG                         GTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTT
genomic: ACAAAGAATGGGATATACGATTTCTGGAACTGGTTTGATGATCGAACTTGgtaagttgat ... ccatttcaagGTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttgttgttaaatgtttctggatataatgtccgtgttacctttccatttcaagGTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTG
                                     ttacctttccatttc  CT-rich tract
         ttaaatgttt  TA-rich tract