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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgtgaaattcatattaagatttgattctattgttttggtgcctttgcaatactctattgcagaacagttttcggtcttttctgacaaattgatattttctgcatcttacttagatgtctgtttaatgcatgcagGATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTG

Basic information

species Glycine max
transcript GLYMA01G01130.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01130.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G061419_T01 (Zea mays), 3'ss of exon 4
gtacatgtgaaattcatattaagatttgattctattgttttggtgcctttgcaatactctattgcagaacagttttcggtcttttctgacaa-attgatattttctgcatcttacttagatgtctgtttaatgca---tgcagGATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
                                                            | || |   |    |  ||| |    | |||| |||| || ||||| ||||| |||   |  | | ||| ||  |   | |||||   | |  | || | | |  |  | ||||| || |||||||| ||||| || ||||||||||||||||||
---------------------------------------------------------gtaagtggattgcctcgtaaggtttacagtcacaatattgttaatttcttcatct-actgtaacat-tatttgatataaatttcagGACAATCTGGAGGCAAAGGTGGTCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG

upper sequence: GLYMA01G01130.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacatgtgaaat---tcatattaagatttgattctattgttttggtgcctttgcaatactctattgcagaacagttttcggtcttttctgacaaattgatattttctgcatcttacttagatgtctgtttaatgcatgcagGATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
|||||   || ||   |||   ||  |||   |||   |  |||| |  || |  |      ||| |   |   |   |   | | |  |||   ||  |     ||| ||| || | || || | | || |||| |  ||||||  |||| |||||| | |  |  | ||||||||||||||||| ||||| || |||||||| ||||| |||
gtacagcagacatgtttcaacatatcattgtgttcgtgttatttgttatctatcgatggaagtatagtccatatggccttcttttgtcttgaagtatctactgactctacatttttccta-atctgtcttcaatgtacacagGATCATGTTGAAGCTAAGGTCGTGGTTGCTGGTTTATCAACAACATGTAGCCAGAAAATTCATAATCAGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgacaaattgatattttctgcatcttacttagatgtctgtttaatgcatgcagGATTCTGTTAAAGCTAGGATTATAATAGCTGGTTTATCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
      aaattgatattttct  TA-rich tract