1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatcccccttctactagttttctctttgttttttctctcttaaattgagcagggtattctgacagtttctcttattgggttctgtttgagttgtttgtagGTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCATGTTGCAGCTCTA
species | Glycine max |
transcript | GLYMA01G01060.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCG GTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGTEST: gi|6483088|gb|AW202280.1|AW202280
genomic: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCGgtaattcttg ... ttgtttgtagGTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGT
EST: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCG GTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGTEST: gi|209711629|gb|BW671340.1|BW671340
genomic: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCGgtaattcttg ... ttgtttgtagGTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGT
EST: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATTTTGAGGATGCG GTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGTEST: gi|14259395|gb|BG882303.1|BG882303
genomic: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCGgtaattcttg ... ttgtttgtagGTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGT
EST: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCC GCTGGAGAATATGTGGTGGGTGAACTGACCA
genomic: CATCTGGGAATATAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCGgtaattcttg ... ttgtttgtagGTTGGAGAAGATGTGGTGGGTGAACTGACCA
tgagcagggtattctgacagtttctcttattgggttctgtttgagttgtttgtagGTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCATGTTGCAGCTCTA
ttctgac putative branch site (score: 2)
tcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcccccttctactagttttctctttgttttttctctcttaaattgagcagggtattctgacagtttctcttattgggttctgtttgagttgtttgtagGTTGGAGAAGATGTGGTGGGTGAACTGACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCATGTTGCAGCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC