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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacattagacttttggctttttacctgccacactacagaattcgctaattccaagtgctgttttgttctttgattatatgccgtcttggatcatatgcagCTGTCCATTTTGCCGAAAG

Basic information

species Glycine max
transcript GLYMA0084S00210.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395373|gb|EV265244.1|EV265244
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|120529166|gb|EH257300.1|EH257300
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|209707530|gb|BW664989.1|BW664989
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|209727804|gb|BW658728.1|BW658728
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAGGTTAGAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAGGTTAGAG
EST: gi|120495419|gb|EH223586.1|EH223586
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|120529421|gb|EH257555.1|EH257555
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|213604531|gb|DB970651.1|DB970651
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|20075803|gb|BQ094586.1|BQ094586
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|213601172|gb|DB964665.1|DB964665
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|21255897|gb|BQ452785.1|BQ452785
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|213618118|gb|DB965275.1|DB965275
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|192299755|gb|FG990050.1|FG990050
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|10231986|gb|BE800874.1|BE800874
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|17519052|gb|BM188094.1|BM188094
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|17400112|gb|BM176894.1|BM176894
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|13181127|gb|BG352467.1|BG352467
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATNTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|209724769|gb|BW672551.1|BW672551
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|120494745|gb|EH222912.1|EH222912
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|9258335|gb|BE346482.1|BE346482
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|213587655|gb|DB971378.1|DB971378
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG
EST: gi|9902884|gb|BE611852.1|BE611852
EST:     AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG                         CTGTCCATTTTGCCGAAAG
genomic: AAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcatt ... tcatatgcagCTGTCCATTTTGCCGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattccaagtgctgttttgttctttgattatatgccgtcttggatcatatgcagCTGTCCATTTTGCCGAAAG
                    ttctttgattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacattagacttttggctttttacctgccacactacagaattcgctaattccaagtgctgttttgttctttgattatatgccgtcttggatcatatgcagCTGTCCATTTTGCCGAAAG

- - - - -cttttgg
- - - - - - - - - - ttacctg
- - - - - - - - - - - - - -ccacact
- - - - - - - - - - - - - - - - - - - - - - - - ttccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgcc