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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
gttctgatatttttcttttttgggtgattcctcctcctccatgtcctttttttgctcatgatggtttttatatttaaatatcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAGTGGAAGGTGAAAACTTGCCTGTTGATATGAACGAGGAACTAAGG
species | Glycine max |
transcript | GLYMA11G02580.1 |
intron # | 29 |
splice site | 3' |
intron type | U2 |
EST: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAG GTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAEST: gi|208074348|gb|GD868713.1|GD868713
genomic: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAGgttctgatat ... tcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTA
EST: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAG GTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAEST: gi|27424976|gb|CA936496.1|CA936496
genomic: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAGgttctgatat ... tcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTA
EST: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAG GTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAEST: gi|151408906|gb|EV278714.1|EV278714
genomic: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAGgttctgatat ... tcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTA
EST: TTACGAATGTGA-TTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAG -TGGCAACTGATTCAGGG-CACTCAGCCTGGATAAAEST: gi|192331355|gb|FK019644.1|FK019644
genomic: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAGgttctgatat ... tcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAA
EST: TTACGAATGTGA-TTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAG GTGGCAACTGATTCAGGG-CACTCAGCCTGGATAAAGTT
genomic: TTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAGgttctgatat ... tcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTT
cctccatgtcctttttttgctcatgatggtttttatatttaaatatcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAGTGGAAGGTGAAAACTTGCCTGTTGATATGAACGAGGAACTAAGG
atgatggtttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgatatttttcttttttgggtgattcctcctcctccatgtcctttttttgctcatgatggtttttatatttaaatatcatggacagGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAGTGGAAGGTGAAAACTTGCCTGTTGATATGAACGAGGAACTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG