Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaaagaaaaaatgaaattagtttctcaaagctaaaattatttcatgcataagttaaaaatcatcttttagaaaaactgagatagcttctgcaaattagTTTAG

Basic information

species Glycine max
transcript GLYMA07G40230.2
intron # 29
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208219503|gb|GE020587.1|GE020587
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAG
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... tgcaaattagTTTAG
EST: gi|207681336|gb|GD661411.1|GD661411
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAG
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... tgcaaattagTTTAG
EST: gi|193664153|gb|FK609979.1|FK609979
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAG
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... tgcaaattagTTTAG
EST: gi|15199998|gb|BI424117.1|BI424117
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAG
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... tgcaaattagTTTAG
EST: gi|7285013|gb|AW597500.1|AW597500
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAG
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... tgcaaattagTTTAG
EST: gi|151410822|gb|EV280637.1|EV280637
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TG-AG
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... tgcaaattagTTTAG
EST: gi|20812570|gb|BQ297048.1|BQ297048
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAG
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... tgcaaattagTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcataagttaaaaatcatcttttagaaaaactgagatagcttctgcaaattagTTTAG
                                         cttctgc  CT-rich tract
     taagttaaaaatcatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaaaagaaaaaatgaaattagtttctcaaagctaaaattatttcatgcataagttaaaaatcatcttttagaaaaactgagatagcttctgcaaattagTTTAG

- - -agaaaaa
- - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - -tcatgca