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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcctattcgtgtgttctatgggtatattatgcttcttttctgagcaattttgctttgaatgatggaagtttcattgtttataaatgttagttggtaaatttgatgttaatttatctaatttttttatttattatttttcttgtttggccagTGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAG

Basic information

species Glycine max
transcript GLYMA02G43930.1
intron # 29
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43930.1 (Glycine max), 3'ss of exon 29
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 29
------------------------------------------gtatttcctattcgtgtgttctatgggtatattatgcttcttttctgagcaattttgctttgaatgatggaagtttcattgtttataaatgttagttggtaaatttgatgttaatttatctaattt--ttttatttattatttttcttgtttggccagTGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAG
                                            | | | ||||     |  | ||      | ||       |  ||   | ||  || | | ||   |     ||||||| |||  | | | |  |||  || | ||| || | |||    ||| |   ||| ||| || | |||  | |||  ||||||||  ||||||||| ||||| |||| || || || |||||||| || ||||||||||| |||||||||||||||
gtatattttccttatgcatccactgtcatattcttctaatgaacactacttattacatggcaccataaaatcagtagatgatatgactacaccatggtggtataaacctttttcttttcattttttcaagaagcttcttg-caattctgacgtcattttgagcaatctacctttgtttgttgtctttactttttc-ccagTGGAGGTTTGCCTTTCTTTCACTAGGTCGCCCAGAGTACCTTCAAGACTCTGACATTGTCTCCAGTCGTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687460|gb|BF595136.1|BF595136
EST:     AAGTAAGAATACAGAAGAAACTTCAAGTCCCTGATGATGAGTTTGTCAAG                         TGGAAATTTGCCNNNNNNNCATTAGGGCGTCCTGAATACCTTCAGGATTCT
genomic: AAGTAAGAATACAGAAGAAACTTCAAGTCCCTGATGATGAGTTTGTCAAGgtatttccta ... gtttggccagTGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCT
EST: gi|10231860|gb|BE800748.1|BE800748
EST:     AAGTAAGAATACAGAAGAAACTTCAAGTCCCTGATGATGAGTTTGTCAAG                         TGGAAATTTGCCNNNNNNNCATTAGGGCGTCCTGAATACCTTCAGGATTCT
genomic: AAGTAAGAATACAGAAGAAACTTCAAGTCCCTGATGATGAGTTTGTCAAGgtatttccta ... gtttggccagTGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgatgttaatttatctaatttttttatttattatttttcttgtttggccagTGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAG
                atctaat  putative branch site (score: 3)
                      tttttttatttattat  CT-rich tract
      atgttaatttatctaa  TA-rich tract