1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtatatagagcttcttctcaccctaaagaagatgtctttgtgatgcaccacataatttcttagataacttgaattgagttcacttttgtcctataaaactttgttttcttggtatgtaatgggtgatttggtgtttttattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAATGAAGAGGATGACATGGAAGGTTGAAGGGGACAAAGGACAAGAACCTC
species | Glycine max |
transcript | GLYMA02G05240.1 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAEST: gi|58024762|gb|CX711503.1|CX711503
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAEST: gi|15337287|gb|BI497943.1|BI497943
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAEST: gi|58021123|gb|CX707865.1|CX707865
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAEST: gi|51338433|gb|CO982299.1|CO982299
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAEST: gi|209712388|gb|BW671240.1|BW671240
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: CCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAEST: gi|31456087|gb|CD398115.1|CD398115
genomic: CCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: ATTCAACTCTTACCCAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCEST: gi|58017781|gb|CX704523.1|CX704523
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATC
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAEST: gi|192326055|gb|FK016222.1|FK016222
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTTAGAAEST: gi|15285854|gb|BI469745.1|BI469745
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
ataaaactttgttttcttggtatgtaatgggtgatttggtgtttttattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAATGAAGAGGATGACATGGAAGGTTGAAGGGGACAAAGGACAAGAACCTC
tttttatt CT-rich tract
tgtttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatagagcttcttctcaccctaaagaagatgtctttgtgatgcaccacataatttcttagataacttgaattgagttcacttttgtcctataaaactttgttttcttggtatgtaatgggtgatttggtgtttttattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAATGAAGAGGATGACATGGAAGGTTGAAGGGGACAAAGGACAAGAACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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