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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactctctgcctcataaagttacctgccttcatttcttgttgtatgctttatgaaattaattgcacatcccatactcctaagtggctgttttgagctagctagcactgggctgtgctgtagttgaatcaactatcatataatatatgactgatgttaatgtctaattatgtatcttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTTTCAGAACGTTTAAAAGAAGAG

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 27
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813165|gb|BQ297643.1|BQ297643
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|9204949|gb|BE331173.1|BE331173
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|7233777|gb|AW569120.1|AW569120
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|15813512|gb|BI785787.1|BI785787
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|18720655|gb|BM523266.1|BM523266
EST:     AGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|6227802|gb|AW156401.1|AW156401
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|14126584|gb|BG791022.1|BG791022
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|7146673|gb|AW508595.1|AW508595
EST:     TTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: TTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|7691707|gb|AW759830.1|AW759830
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|19348791|gb|BM893323.1|BM893323
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|10233815|gb|BE802703.1|BE802703
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
EST: gi|254334421|gb|GR844206.1|GR844206
EST:     AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAG                         ATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT
genomic: AAAAGCACCCTGCATCATATCAGATTTCTTATATAGTTCCCCCAAATAAGgttactctct ... cttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatcatataatatatgactgatgttaatgtctaattatgtatcttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTTTCAGAACGTTTAAAAGAAGAG
                               gtctaat  putative branch site (score: 3)
                                          tatctttt  putative PPT
                                  taattatgtatctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttactctctgcctcataaagttacctgccttcatttcttgttgtatgctttatgaaattaattgcacatcccatactcctaagtggctgttttgagctagctagcactgggctgtgctgtagttgaatcaactatcatataatatatgactgatgttaatgtctaattatgtatcttttgaaagATTGATGAGGACAAGGGAAAAGGTTCTTCCTTATCTTCCAAGAAGAATGTTTCAGAACGTTTAAAAGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG