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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtagtctctttttgtttgagtgggctggaaagggagatagctttcagtccttgaattcttcctgcttttgttaattgaaatgattgcactagtggatttttctaaatactcaattatagtttcatttatttattcagtttatgtataaaaataaatgtgtcacttttttcttggtattccagATACCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTGTATCATTTTACTAAAGACACAGCACAGAATCAAATG

Basic information

species Glycine max
transcript GLYMA14G04890.1
intron # 27
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04890.1 (Glycine max), 3'ss of exon 27
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 27
gtagtagtctctttttgtttgagtgggctggaaagggagatagctttcagtccttgaattcttcctgcttttgttaattgaaatgattgcactagtggatttttctaaatactcaattatagtttcatttatttattcagtttatgtataaaaataaatgtgtcacttt--tttcttggtattccagATACCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTGTATCATTTTACTAAAGACACAGCACAGAATCAAATG
                                                                              | |  | |||   ||  |  | |||||||| |  |  || | |||   || ||  |  ||    | ||       || ||| |  || |||   || |   |||| ||||| || ||||||||||||||||| || || || |||||  | || ||||| || || ||||| ||||||||||| ||||| ||||||
------------------------------------------------------------------------------ttagttaatttttcttttttaattttctaatt--tagatgaaagtaaaatgtacatgatccagatttg-------atcaattttccaatttaacttttaaatattgcagATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTATACCACTTTACAAAAGACACAGCTCAGAACCAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347912|gb|BI973507.1|BI973507
EST:     AAAAGATCGAAAGCATTAATGATCAATACTGGACATTACGTGCAGAGGAG                         ATACCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTG
genomic: AAAAGATCGAAAGCATTAATGATCAATACTGGACATTACGTGCAGAGGAGgtagtagtct ... ggtattccagATACCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTG
EST: gi|58020429|gb|CX707171.1|CX707171
EST:     AAAAGATCGAAAGCATTAATGATCAATACTGGACATTACGTGCAGAGGAG                         ATACCAGAAGAAGAG-AAAATCTGGGTCTTCATGATCGTCTAATCCATGTG
genomic: AAAAGATCGAAAGCATTAATGATCAATACTGGACATTACGTGCAGAGGAGgtagtagtct ... ggtattccagATACCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattcagtttatgtataaaaataaatgtgtcacttttttcttggtattccagATACCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTGTATCATTTTACTAAAGACACAGCACAGAATCAAATG
                                tcacttttttcttg  CT-rich tract
     ttcagtttatgtataa  TA-rich tract