1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
...tggtgttagcttagttggtaatttatgggatactcctaactaaattctcacgataattttcttatactataactaactatcatattccttacttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATATTACTACCACATGCAGGGACATGGGAGCAGTAAAAAAGGTTTTTCAGC
species | Glycine max |
transcript | GLYMA06G05900.1 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: TAACTGGGAGGAAAGCTTGTTTGACAACGAATCAAACCTCCATCATCTG ATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATEST: gi|193668501|gb|FK608931.1|FK608931
genomic: TAACTGGGAGGAAAGC-TG-TTGACAACGAATCAAACCTCCATCATCTGgtgagtcttc ... acttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGAT
EST: CAACGAATCAAACCTTCCATCATCTG ATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATEST: gi|193497998|gb|FK458738.1|FK458738
genomic: CAACGAATCAAACC-TCCATCATCTGgtgagtcttc ... acttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGAT
EST: CAACGAATCAAACCTCCATCATCTG ATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATEST: gi|208174059|gb|GD968538.1|GD968538
genomic: CAACGAATCAAACCTCCATCATCTGgtgagtcttc ... acttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGAT
EST: TTCTAACTGGGAGGAAAGCTGTTGACAACGAATCAAACCTCCATCATCTG ATTTTGTCCAAGACAGEST: gi|5677050|gb|AI938180.1|AI938180
genomic: TTCTAACTGGGAGGAAAGCTGTTGACAACGAATCAAACCTCCATCATCTGgtgagtcttc ... acttgcgtagATTTTGTCCAAGACAG
EST: AACGAATCAAACCTCCATCATCTG ATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATEST: gi|193564229|gb|FK518378.1|FK518378
genomic: AACGAATCAAACCTCCATCATCTGgtgagtcttc ... acttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGAT
EST: CAACGAATCAAACCTCCATCATCTG ATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGAT
genomic: CAACGAATCAAACCTCCATCATCTGgtgagtcttc ... acttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGAT
tctcacgataattttcttatactataactaactatcatattccttacttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATATTACTACCACATGCAGGGACATGGGAGCAGTAAAAAAGGTTTTTCAGC
ttccttactt CT-rich tract
ataattttcttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgttagcttagttggtaatttatgggatactcctaactaaattctcacgataattttcttatactataactaactatcatattccttacttgcgtagATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATATTACTACCACATGCAGGGACATGGGAGCAGTAAAAAAGGTTTTTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG