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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgacattatataaaccctctatacaacaatcttatggtatttccgttgcctgttcagttctttaagttgctgcactgaatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCTGGTCAACGTCCACAGCATTTTAAGGTCACTGAAAATGATCTAGAATGTC

Basic information

species Glycine max
transcript GLYMA20G36330.2
intron # 26
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22931219|gb|BU548358.1|BU548358
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|208295580|gb|GE092725.1|GE092725
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTT
EST: gi|254319444|gb|GR830695.1|GR830695
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|58021183|gb|CX707925.1|CX707925
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|9203540|gb|BE329764.1|BE329764
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|18039692|gb|BM307986.1|BM307986
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|14206129|gb|BG839807.1|BG839807
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggtatttccgttgcctgttcagttctttaagttgctgcactgaatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCTGGTCAACGTCCACAGCATTTTAAGGTCACTGAAAATGATCTAGAATGTC
                         ttctttaa  TA-rich tract