1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtatgtgactgattagttttctatttaaaggatgccatcaacagattctacagcttttgctgatcattcttgtattggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACCCATGTACCAACACAACCAGCTCCAACATCTCCACCAGTGGCCCAACCA
species | Glycine max |
transcript | GLYMA17G05410.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACEST: gi|14990250|gb|BI315923.1|BI315923
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgact ... tggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACEST: gi|27426195|gb|CA937715.1|CA937715
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgact ... tggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACEST: gi|6951274|gb|AW423403.1|AW423403
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgact ... tggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACEST: gi|4260044|gb|AI416540.1|AI416540
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgact ... tggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAAC
EST: CTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAAC
genomic: CTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgact ... tggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAAC
gatgccatcaacagattctacagcttttgctgatcattcttgtattggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACCCATGTACCAACACAACCAGCTCCAACATCTCCACCAGTGGCCCAACCA
tgctgat putative branch site (score: 3)
ttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgactgattagttttctatttaaaggatgccatcaacagattctacagcttttgctgatcattcttgtattggtttgcagGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACCCATGTACCAACACAACCAGCTCCAACATCTCCACCAGTGGCCCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC