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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattgctatccattgtcaacgtttcagatatttccactgacagtaatgacgacaattgtaaaatttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTGTCCTTTGTTGGTCAGGGAGAGAATAAAAGTCCTGAAAAGCACCCTGCAT

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 26
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813165|gb|BQ297643.1|BQ297643
EST:     AAAGAAGGAATATATCTTGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
genomic: AAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
EST: gi|7233777|gb|AW569120.1|AW569120
EST:     TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
genomic: TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
EST: gi|15813512|gb|BI785787.1|BI785787
EST:     TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
genomic: TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
EST: gi|6227802|gb|AW156401.1|AW156401
EST:     TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTNGTTT-GCTAGGGGCAATTTCATATGGGAAGCT
genomic: TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCT-GTTTTGCTAGGGGCAATTTCATATGGGAAGCT
EST: gi|14126584|gb|BG791022.1|BG791022
EST:     TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
genomic: TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
EST: gi|7691707|gb|AW759830.1|AW759830
EST:     TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
genomic: TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
EST: gi|19453651|gb|BM955061.1|BM955061
EST:     TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
genomic: TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
EST: gi|254334421|gb|GR844206.1|GR844206
EST:     TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAG                         AATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG
genomic: TAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAGgtacattgct ... atttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgtttcagatatttccactgacagtaatgacgacaattgtaaaatttctgcagAATTCTCCACAAGGATCTGTTTTGCTAGGGGCAATTTCATATGGGAAGCTGTCCTTTGTTGGTCAGGGAGAGAATAAAAGTCCTGAAAAGCACCCTGCAT
                 cactgac  putative branch site (score: 2)
                                              tttctgc  putative PPT
                                  acaattgtaaaattt  TA-rich tract