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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgttagtcacaagtctctaattagatcatttaatcaaacatctctatctctgcattgggaaaattcaaaatcattacttcagtgttgtttataatattttatgcttttgctgggtctaagatgatatgtatcattttgcagGCCAAATCAAATGCCCAGAAGCCTAATCAGAGAAGGGAATGGAAGAACATCAAACGGAAGTCCACATTGTCTACAGTAGTACTAAATGTTGTTCCTCCGA

Basic information

species Glycine max
transcript GLYMA14G36030.1
intron # 26
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336060|gb|CO979926.1|CO979926
EST:     ACAGTGATCATGGGCCAAGAAAACCACTTTCTGATATTGGAAATACACTG                         GCCAAATCAAATGCCCAGAAGCCTAATCAGAGAAGGGAATGGAAGAACATC
genomic: ACAGTGATCATGGGCCAAGAAAACCACTTTCTGATATTGGAAATACACTGgtgcgtgtta ... cattttgcagGCCAAATCAAATGCCCAGAAGCCTAATCAGAGAAGGGAATGGAAGAACATC
EST: gi|51345219|gb|CO985952.1|CO985952
EST:     ACAGTGATCATGGGCCAAGAAAACCACTTTCTGATATTGGAAATACACTG                         GCCAAATCAAATGCCCAGAAGCCTAATCAGAGAAGGGAATGGAAGAACATC
genomic: ACAGTGATCATGGGCCAAGAAAACCACTTTCTGATATTGGAAATACACTGgtgcgtgtta ... cattttgcagGCCAAATCAAATGCCCAGAAGCCTAATCAGAGAAGGGAATGGAAGAACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttataatattttatgcttttgctgggtctaagatgatatgtatcattttgcagGCCAAATCAAATGCCCAGAAGCCTAATCAGAGAAGGGAATGGAAGAACATCAAACGGAAGTCCACATTGTCTACAGTAGTACTAAATGTTGTTCCTCCGA
                                            tcatttt  CT-rich tract
     taatattttatgcttt  TA-rich tract