1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtatgtgattagtatttccacttaaaggatgacgttgacagattcaacagcttttgctgaacattcttgtattggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACCCGTGTACCAACACAACCAGCTCCGACATCTCCACCACTGGCCCAACCA
species | Glycine max |
transcript | GLYMA12G30520.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACEST: gi|192307607|gb|FG999646.1|FG999646
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACEST: gi|21286017|gb|BQ473888.1|BQ473888
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACEST: gi|10231964|gb|BE800852.1|BE800852
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTEST: gi|151404341|gb|EV274151.1|EV274151
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATT
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGG-ACCCAACACTAACATTTGA GATGAAG-AGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACEST: gi|151400490|gb|EV270304.1|EV270304
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACEST: gi|51334703|gb|CO978569.1|CO978569
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACEST: gi|298170085|gb|HO018709.1|HO018709
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
EST: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA GATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
genomic: ACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAgtatgtgatt ... tggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAAC
gatgacgttgacagattcaacagcttttgctgaacattcttgtattggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACCCGTGTACCAACACAACCAGCTCCGACATCTCCACCACTGGCCCAACCA
cgttgac putative branch site (score: 4)
ttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgattagtatttccacttaaaggatgacgttgacagattcaacagcttttgctgaacattcttgtattggtttgcagGATGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCGCCATAGCAACCCGTGTACCAACACAACCAGCTCCGACATCTCCACCACTGGCCCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC