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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taattgacgcattaacatctttcagtaaaatgtaaataaacattttcaatccaagcaatgattttatattcatgattttgatatgtacatttttttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTAGGATCAGCCCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCACT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.1 (Glycine max), 3'ss of exon 26
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 25
taattgacgcattaacatctttcagtaaaatgtaaataaacattttcaatccaagcaatgattttatattcatgattttgatatgtacatttt-----tttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTAGGATCAGCCCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCACT
  |||      ||    | |     || |||  | | |    |  | |||  |  ||  || |  |||||| |   | | || |   ||||||     ||   ||| ||||| |||||||||||||||||||||||   ||||||  | || ||||| ||| |||| |||||||||||||| || ||||||||||| || || | 
--attatgatgtttgattttagagatacaattcacaaactactgcttaatata--catagactgcatattcttctatctaat-tcctcattttctatcttcttagGCCCTACAAAGAAGAAAAAGCTTGATTGGGAAACTCGTCTTCAGATTGCACTTGGAGCAGCTCAAGGGCTTGCTTACCTTCACCATGATTGTAGCCCTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207785662|gb|GD755731.1|GD755731
EST:     TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATG                         GACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCAC
genomic: TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATGgtaagttcaa ... ttttttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCAC
EST: gi|207777724|gb|GD749687.1|GD749687
EST:     TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATG                         GACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCAC
genomic: TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATGgtaagttcaa ... ttttttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCAC
EST: gi|193490625|gb|FK456408.1|FK456408
EST:     TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATG                         GACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAA
genomic: TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATGgtaagttcaa ... ttttttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAA
EST: gi|193337606|gb|FK304624.1|FK304624
EST:     TCTTTTATTGACTACATGGAAAATAGGCAGTCTATGGGATCTTCTGCATG                         GACCTACCAAGAAGAAAAAGACTTGATTGGGATCTTCGTCTAAAAATAGCA
genomic: TCTTTTA-TGACTACATGGAAAAT-GGCAGTCTATGGGATCTTCTGCATGgtaagttcaa ... ttttttgcagGACCTACCAAGAAGAAAAAG-CTTGATTGGGATCTTCGTCTAAAAATAGCA
EST: gi|193696097|gb|FK637565.1|FK637565
EST:     TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATG                         GACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAA
genomic: TCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATGgtaagttcaa ... ttttttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatccaagcaatgattttatattcatgattttgatatgtacatttttttgcagGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTAGGATCAGCCCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCACT
                              ttttgat  putative branch site (score: 4)
                                          cattttttt  putative PPT
               attttatattcatgat  TA-rich tract