1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...cattagttatatatgacttgaaaattgttatccaaacacttctttttatggtaaagttgtaaagatgcatcgatctgacattcctcgtttcttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATAATGCTGTCCAGATCTTGGAAATTTTGCCATAATTTGTGCATATGGAGCA
species | Glycine max |
transcript | GLYMA04G04380.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAG TGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATAEST: gi|7283903|gb|AW596504.1|AW596504
genomic: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAGgtaataagca ... cttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATA
EST: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAG TGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATAEST: gi|18041217|gb|BM309511.1|BM309511
genomic: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAGgtaataagca ... cttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATA
EST: GAATTATCCTAGACACATGGCATTTGGAAATAACAGGGCACTAGGAGCAG TGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATAEST: gi|51344121|gb|CO984854.1|CO984854
genomic: GAATTATCCTAGACACATGGCATT-GGAAATAACAGGGCACTAGGAGCAGgtaataagca ... cttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATA
EST: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAG TGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATAEST: gi|298170712|gb|HO015688.1|HO015688
genomic: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAGgtaataagca ... cttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATA
EST: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAG TGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATA
genomic: AGAATTATCCTAGACACATGGCATTGGAAATAACAGGGCACTAGGAGCAGgtaataagca ... cttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATA
ttatggtaaagttgtaaagatgcatcgatctgacattcctcgtttcttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATAATGCTGTCCAGATCTTGGAAATTTTGCCATAATTTGTGCATATGGAGCA
atctgac putative branch site (score: 3)
cattcctcgtttctt CT-rich tract
taaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattagttatatatgacttgaaaattgttatccaaacacttctttttatggtaaagttgtaaagatgcatcgatctgacattcctcgtttcttgcaacagTGTAATATAATTGGTTGCTGAAGAAATGTATATACCTGTCAGTATTGAATAATGCTGTCCAGATCTTGGAAATTTTGCCATAATTTGTGCATATGGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - -tgacttg
- - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaca