Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgtttcctcttatgtaatttgtgttattattattttgatttaattgctgctttgctgattgtatttttcttgtttacagTTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGC

Basic information

species Glycine max
transcript GLYMA02G45000.1
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 26
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 27
gtaggtgtttcctcttatgtaatttgtgttattattattttgatttaattgctg--ctttgctgattgtatt-tttcttgtttacagTTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGC
||| ||    |||    |  |  || |  ||| |  || |   ||   ||  |   | |   |  || |||  |||  ||||  |||| |||||||| ||||| ||||| ||||| | ||| ||||| ||||| ||||||||||||||  |||| ||||| || ||||| ||||  || || |||||
gtatgtacaacctaaattcaatattatcatatcagcatctgtcttatgttttttatcctaagtctttttatcatttggtgttctcagTCGATGATGCGAGATTGCTTCTGGGAATTCTTTATCATGGTTTTGGGAATTGGGAAAAGATACGATTAGATGAGAGCCTTGGACTTACAAAGAAGATTGC

upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 26
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 26
gtaggtgtt-------tcctcttatgtaatttgtgttattattattttgat----------ttaattgctgctttgctgattgtatttttcttgtttac-------------agTTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGC
||| |||||       | || |||| |  ||  | |  ||||| |||||||          || | |  || ||| ||||||||| |  | ||   ||              |||||| ||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| || || || |  ||||| || ||
gtaagtgttatcatttttctattatatttttcatttctttatttttttgatagaaaggaaattcagttatgtttttctgattgtaatacttttaactattgatattgtcattagTTGACGATGCCAGATTGCTTCTTGGAATACATTATCATGGATTTGGCAATTGGGAAAAGATAAGATTAGATGAAAGGCTGGGTCTCACAAAAAAGATCGC

upper sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 26
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 3'ss of exon 27
----------------gtaggtgtttcctcttatgtaatttgtgttattattattttgatttaattgctgctttgctgattgtatttttcttgtttacagTTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGC
                 |  ||||||      |||  |    | |  ||  |  ||||     | ||     | | |  || | | |    ||||   ||||||||| || ||| ||||  | ||  |  ||||||||||  ||||||||||||| ||||| ||| ||||||||| |||    ||  |  | ||| | ||
ccttcttgcgcttgcgatttgtgttttagtggatgagaaaattatattttgtgctttgtaaccactggaatgtcgatttttttgtgtgatatgttcgtagTTGATGACGCAAGACTACTATTGGGTGTTTATTACCATGGACTTGGTAATTGGGAGAAGATAAGACTGGATGAAAAACTCTTTCTGTTCGATAAATTGGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208252291|gb|GE047829.1|GE047829
EST:     GTCATATCTCAAACCATCGAACTGGTCCAAAGGTTGTGGATGGAATCAAA                         TTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATT
genomic: GTCATATCTCAAACCATCGAACTGGTCCAAAGGTTGTGGATGGAATCAAAgtaggtgttt ... ttgtttacagTTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattattttgatttaattgctgctttgctgattgtatttttcttgtttacagTTGATGATGCTAGATTACTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTATGAAAAAAATTGC
                            tgctgat  putative branch site (score: 3)
                                     tatttttcttgttt  putative PPT
     ttattttgatttaatt  TA-rich tract