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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatctaatctatattatttttaaaatgggtttgttaaatttgttgaatattaggtataggaagacattagaatatgtttatgatattcttctatttggattttaacatttaccttgtgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA

Basic information

species Glycine max
transcript GLYMA18G02110.1
intron # 25
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02110.1 (Glycine max), 3'ss of exon 25
lower sequence: GRMZM2G060045_T01 (Zea mays), 3'ss of exon 22
gtatgtaaatctaatctatattatttttaaaatgggtttgttaaatttgttgaatattaggtataggaagacattagaatat--gtttatgatattcttctatttggattttaacatttaccttgtgttctta--agGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA
                                                || |  |||||  |    ||  ||||     | |   ||| |  |  | | |  | |  | |  ||  |  | ||  |  | ||   |||| || ||||| |||||| | ||||| |||||||||||||||||||| |||||
------------------------------------------------gtcgg-tattaactggcagagcacatctatttgttcctttttcgttctatacgctattaagtgaaaagtcaatctcttccttttgctagGCTCGTTTGTTTTTCCATCATCCTAAGTTTGGTATCCTGGACGAGTGCACCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283600|gb|BE021159.1|BE021159
EST:     TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATG                         GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
genomic: TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGgtatgtaaat ... tgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
EST: gi|120494271|gb|EH222438.1|EH222438
EST:     TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATG                         GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
genomic: TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGgtatgtaaat ... tgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
EST: gi|8283612|gb|BE021171.1|BE021171
EST:     TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATG                         GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
genomic: TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGgtatgtaaat ... tgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtttatgatattcttctatttggattttaacatttaccttgtgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA
                            ttttaac  putative branch site (score: 2)
                                             tgttctt  putative PPT
                           attttaacattta  TA-rich tract