1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...ttatttattaaattgatgataacattagttgaagctttttgtagttgataacatttttaaacttgtttttttttttttttttgtgaatgatgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA
species | Glycine max |
transcript | GLYMA17G05410.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA GCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTEST: gi|16105068|gb|BI892808.1|BI892808
genomic: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTT
EST: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA GCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTEST: gi|254329934|gb|GR839487.1|GR839487
genomic: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTT
EST: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA GCAAGAATTGAAACAGACCCEST: gi|27426195|gb|CA937715.1|CA937715
genomic: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGCAAGAATTGAAACAGACCC
EST: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA GCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTEST: gi|6951274|gb|AW423403.1|AW423403
genomic: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTT
EST: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA GCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTEST: gi|20811622|gb|BQ296100.1|BQ296100
genomic: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTT
EST: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA GCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTT
genomic: TTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTT
tgataacatttttaaacttgtttttttttttttttttgtgaatgatgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA
tgataac putative branch site (score: 2)
atttttaaacttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttattaaattgatgataacattagttgaagctttttgtagttgataacatttttaaacttgtttttttttttttttttgtgaatgatgatgtgcagGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga