1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...aggcatctttatgaatgcagaccgcctttaatttgactcaaaactgctgacctgataatggtttgcttcagtgttatattgatgcatttcatgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTTTCTCTAAGATGGTCCAAAGCACAGGAGCTGCAAATTCCCAGTATTTAC
species | Glycine max |
transcript | GLYMA15G09900.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: ATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTEST: gi|58018586|gb|CX705328.1|CX705328
genomic: ATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
EST: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTC-TGNAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCEST: gi|19270923|gb|BM887179.1|BM887179
genomic: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTG-AATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGC
EST: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTEST: gi|18040941|gb|BM309235.1|BM309235
genomic: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
EST: CATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTEST: gi|9900742|gb|BE609710.1|BE609710
genomic: CATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
EST: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTEST: gi|7283342|gb|AW595950.1|AW595950
genomic: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
EST: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTEST: gi|8282638|gb|BE020199.1|BE020199
genomic: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
EST: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTEST: gi|8669733|gb|BE190840.1|BE190840
genomic: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
EST: TTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTEST: gi|18040503|gb|BM308797.1|BM308797
genomic: TTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
EST: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAG GTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
genomic: TAAACACCATTATTGATTGTGATCGAATTCTTTTGCTTGATGGTGGTAAGgtatgcactc ... atgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCT
gctgacctgataatggtttgcttcagtgttatattgatgcatttcatgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTTTCTCTAAGATGGTCCAAAGCACAGGAGCTGCAAATTCCCAGTATTTAC
atttcatgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcatctttatgaatgcagaccgcctttaatttgactcaaaactgctgacctgataatggtttgcttcagtgttatattgatgcatttcatgtttaaagGTTCTTGAATACGATACCCCTGAGGAGCTGCTGTCAAATGAAGGTAGTGCTTTCTCTAAGATGGTCCAAAGCACAGGAGCTGCAAATTCCCAGTATTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - gaatgca
- - - - - - - - - - accgcct
- - - - - - - - - - - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - - - - - -ctgctga
- - - - - - - - - - - - - - - - - - - - - - - - - cctgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttc