1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...aaaaagaaatctttcctcaaacaagcttgcgtggcaatttttcatttgcacttgcaaaaacttaagggtagagcttgatacttatccttgtgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAACCAGTTTGCGGTTGGGTTGACGGATGGATCTGTCAAAGTGATAGAACCG
species | Glycine max |
transcript | GLYMA10G29090.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGG AAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAAEST: gi|254345364|gb|GR851633.1|GR851633
genomic: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGgtgagtttca ... tgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
EST: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGG AAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAAEST: gi|213599618|gb|DB975767.1|DB975767
genomic: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGgtgagtttca ... tgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
EST: AGATGTCGTATTGCTCCATCAATATGCTAAAGGCCGGCAGCTTTGTGTGG AAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAAEST: gi|214006545|gb|DB987256.1|DB987256
genomic: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGgtgagtttca ... tgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
EST: GATGCCGTATTGCTCCATCAATATGCTGGTCA-CGAGCAGCTTTAAGTGG AAGTCAAGGTGTGTATCCTCTTGTGGTTGCAACTCATCCTCTAGAACCCAAEST: gi|58018315|gb|CX705057.1|CX705057
genomic: GATGTCGTATTGCTCCATCAATATGCTTGTCACCG-GCAGCTTTAAGTGGgtgagtttca ... tgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
EST: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGG AAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAAEST: gi|254345363|gb|GR851632.1|GR851632
genomic: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGgtgagtttca ... tgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
EST: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGG AAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAAEST: gi|213615003|gb|DB978380.1|DB978380
genomic: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGgtgagtttca ... tgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
EST: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGG AAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
genomic: AGATGTCGTATTGCTCCATCAATATGCTTGTCACCGGCAGCTTTAAGTGGgtgagtttca ... tgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAA
ttgcacttgcaaaaacttaagggtagagcttgatacttatccttgtgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAACCAGTTTGCGGTTGGGTTGACGGATGGATCTGTCAAAGTGATAGAACCG
gcttgat putative branch site (score: 5)
tccttgt putative PPT
aaaaacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaagaaatctttcctcaaacaagcttgcgtggcaatttttcatttgcacttgcaaaaacttaagggtagagcttgatacttatccttgtgtattgcagAAGTCAAGGTGTGTATCCTCTTGTGGTTGCTGCTCATCCTCTAGAACCCAACCAGTTTGCGGTTGGGTTGACGGATGGATCTGTCAAAGTGATAGAACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- aaagaaa
- - - - - - - cctcaaa
- - - - - - - - - - - - - -tgcgtgg
- - - - - - - - - - - - - - - - - - - - - - - tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcttg