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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtgtttttttccccttttataattttgatttgattttttaaagataattcttgggggttgttcattttttttaatgttaactgtcatttttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCTGTCTACTATAGATATCCGAATAGCCAGCGAGTTACATATGGCCAGTTCA

Basic information

species Glycine max
transcript GLYMA05G34330.1
intron # 25
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34330.1 (Glycine max), 3'ss of exon 25
lower sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 26
---gtacttgtgtttttttccccttttataattttgatttgattttttaaagataattcttgggggttgttcattttttttaatgttaactgtcatttttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCTGTCTACTATAGATATCCGAATAGCCAGCGAGTTACATATGGCCAGTTCA
       |||  | || ||   |||| | |||     | |    |      | |  |  ||      |  | | |  |  |  ||||   |   | | |||| ||||||| | |||||  | ||||||| |||||| ||||||||||| || |||||||| || |||||||| ||||| |||||||| || |||| ||| || ||  
gtaactattgaatattattattctttgacaatcaaagtatagaatc---ggggttttctttctaacctagttactaatgctgttgttg-tttctaatcttttctcagAGTAAAGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTG

upper sequence: GLYMA05G34330.1 (Glycine max), 3'ss of exon 25
lower sequence: Vv01s0011g06090.t01 (Vitis vinifera), 3'ss of exon 6
gtacttg-tgtttttttccccttttataattttgatttgattttttaaagataattcttgggggttgttcattttttttaatgttaactgtcatttttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCTGTCTACTATAGATATCCGAATAGCCAGCGAGTTACATATGGCCAGTTCA
|||  |   |   ||   | |||   ||  |||    |  ||||||      |  | ||  |     ||||| ||   |||   |     |||||||||  ||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| ||||||||||| || || ||||| || |||||||||||||| |
gtatctaacgaaattaatcacttgagtagctttttcatttttttttgggtgcagattttaagatagtttcatgttgactaacact-----tcattttttcatcagAGTGATGAATCAATATATGAACGGGAGTGTGGGAACATGCCAGGCTTTGCTGTCTATTATAGATATCCTAACAGTCAGCGTGTCACATATGGCCAGTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9985875|gb|BE660102.1|BE660102
EST:     GGCTTGGCAGGTTTCTGTATGAGACTTTGAAGATTGCATACTATTGGAAG                         AGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGNTTTGCT
genomic: GGCTTGGCAGGTTTCTGTATGAGACTTTGAAGATTGCATACTATTGGAAGgtacttgtgt ... tttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattcttgggggttgttcattttttttaatgttaactgtcatttttttttcagAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCTGTCTACTATAGATATCCGAATAGCCAGCGAGTTACATATGGCCAGTTCA
                               tgttaac  putative branch site (score: 2)
                                     ctgtcatttttttttc  CT-rich tract
                 ttcattttttttaatg  TA-rich tract