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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catattaatcaaagttgtttcattaagaaaaataatttatggtgcctggagaaattaattattgattttgtaattgacaaatgttgtttttgttaataagGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGACCTCCAAAGGCAGGTTTTGTTTTTCGACGTGTGAAGTGCTTAACAGCAA

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 25
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 25
lower sequence: AT1G71820.1 (Arabidopsis thaliana), 3'ss of exon 25
------------------------------------catattaatcaaagttgtttcattaagaaaaataatttatggtgcctggaga--aattaattattgattttgtaattgac-aaatgttgtttttgttaataa--gGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGACCTCCAAAGGCAGGTTTTGTTTTTCGACGTGTGAAGTGCTTAACAGCAA
                                      |  ||||   ||  |  |||    ||    |||  ||||||  |  ||    || |    |   ||| |  ||||||| ||||| |  |  || | | ||  |||  | ||||||||||||||||||||||||||  |||| || ||||| |  ||||||||| |||| ||||| || |   | || ||||||||||| ||  
gtaaacataccaaactctcttttttggaaaatgctgggttataattgtagc-gaatcacatggatttttaaactatggttacgagacttcaaatggcgaagaattcttaaattgacgaaatggttatggtgatgaaaacagGTGGTACAAGAGTGCAAAGAGATATATGAGAACACACTGGTAGATGGTAATCCTCCAAAGACAGGATTTGTATTCCCGAGAGTCAAGTGCTTAACTGCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283668|gb|BE021227.1|BE021227
EST:     AGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAGGATGCCAAGGAG                         GTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGA
genomic: AGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAGGATGCCAAGGAGgtaaattaaa ... tgttaataagGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGA
EST: gi|10238802|gb|BE807690.1|BE807690
EST:     AGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAGGATGCCAAGGAG                         GTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGA
genomic: AGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAGGATGCCAAGGAGgtaaattaaa ... tgttaataagGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGA
EST: gi|13787273|gb|BG649865.1|BG649865
EST:     GGAAGGATGCCAAGGAG                         GTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAA
genomic: GGAAGGATGCCAAGGAGgtaaattaaa ... tgttaataagGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAA
EST: gi|151398921|gb|EV268792.1|EV268792
EST:     AGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAGGATGCCGAGGAG                         GTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGA
genomic: AGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAGGATGCCAAGGAGgtaaattaaa ... tgttaataagGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggagaaattaattattgattttgtaattgacaaatgttgtttttgttaataagGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAGACCTCCAAAGGCAGGTTTTGTTTTTCGACGTGTGAAGTGCTTAACAGCAA
                          aattgac  putative branch site (score: 3)
                                      ttgttttt  putative PPT
      aaattaattattgatt  TA-rich tract