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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacttaatttgtttcaggtacttaattatggattaataatcatcaccatattatactcatgattttttttattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG

Basic information

species Glycine max
transcript GLYMA02G05240.1
intron # 25
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308097944|gb|HO761115.1|HO761115
EST:     CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAG                         AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
EST: gi|58024762|gb|CX711503.1|CX711503
EST:     CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAG                         AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
EST: gi|15337287|gb|BI497943.1|BI497943
EST:     GGCTTTCACACATGAG                         AACTCGGAAAACAAGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: GGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
EST: gi|58021123|gb|CX707865.1|CX707865
EST:     CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAG                         AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
EST: gi|51338433|gb|CO982299.1|CO982299
EST:     CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAG                         AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
EST: gi|58017781|gb|CX704523.1|CX704523
EST:     CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAG                         AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
EST: gi|192326055|gb|FK016222.1|FK016222
EST:     CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAG                         AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: CAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
EST: gi|15285854|gb|BI469745.1|BI469745
EST:     CTTAGTGGCTTTCACACATGAG                         AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT
genomic: CTTAGTGGCTTTCACACATGAGgtatgactta ... tattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatggattaataatcatcaccatattatactcatgattttttttattgatcagAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG
      gattaat  putative branch site (score: 3)
                                      ttttttttatt  putative PPT
                       atattatactcatgat  TA-rich tract