1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaagtttctgcccaacagatcagacctaaattttactttctattgtattaaaaattgagcatttattcaaggatgtagcattgtgaagattttcgttggtggtccatattgtgtaatactatattgcaggaaccagTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAAT
species | Glycine max |
transcript | GLYMA19G41840.2 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: GCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGG TCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTTEST: gi|14990052|gb|BI315725.1|BI315725
genomic: GCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGgtaagtttct ... caggaaccagTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTT
EST: TGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGGAACCAGEST: gi|18848884|gb|BM567995.1|BM567995
genomic: TGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGT--G-----Ggtaagtttct ... cagg
EST: ATACTTTTCACCTGCAGCAGCTTTAAGTGGGAACCAG
genomic: ATACTTTTCACCTGCAGCAGCTTTAAGT--G-----Ggtaagtttct ... cagg
tgtgaagattttcgttggtggtccatattgtgtaatactatattgcaggaaccagTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAAT
tgtaatactatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctgcccaacagatcagacctaaattttactttctattgtattaaaaattgagcatttattcaaggatgtagcattgtgaagattttcgttggtggtccatattgtgtaatactatattgcaggaaccagTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG