1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...acttggttttgggtgtggttatatatttacactgaagtttttgtatgtatctgaaaaaagactatttcactacaactttaatctgtacttttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAGTCTTACAGAAGCTAGTAACTATCAAAAGAACATGCTTGCTCTTGATTCA
species | Glycine max |
transcript | GLYMA17G13080.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAG ACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGGATATGGAEST: gi|6724703|gb|AW309036.1|AW309036
genomic: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAGgtacatgttt ... ttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATG-A
EST: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAG ACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAGEST: gi|9565778|gb|BE475287.1|BE475287
genomic: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAGgtacatgttt ... ttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAG
EST: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAG ACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAGEST: gi|11412331|gb|BF424342.1|BF424342
genomic: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAGgtacatgttt ... ttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAG
EST: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAG ACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAGEST: gi|193656372|gb|FK602844.1|FK602844
genomic: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAGgtacatgttt ... ttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAG
EST: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAG ACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAG
genomic: GCCTTTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAGgtacatgttt ... ttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAG
tgtatctgaaaaaagactatttcactacaactttaatctgtacttttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAGTCTTACAGAAGCTAGTAACTATCAAAAGAACATGCTTGCTCTTGATTCA
ctttaat putative branch site (score: 4)
cttttgtct putative PPT
aaaaaagactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttggttttgggtgtggttatatatttacactgaagtttttgtatgtatctgaaaaaagactatttcactacaactttaatctgtacttttgtctgcagACACCCAACTCTTCATGGGATTCCCAGAGAAAATAGAATGCTGCATATGAGTCTTACAGAAGCTAGTAACTATCAAAAGAACATGCTTGCTCTTGATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC