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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatattgaagtccctttttctttttttgattattttccctgacattctttaaccactaatttatatattgtttctgctgtctttctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA

Basic information

species Glycine max
transcript GLYMA17G05410.1
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990250|gb|BI315923.1|BI315923
EST:     CAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT                         GATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
genomic: CAACAGTTTCCATTTGACAGTTTGCCCAGGGCTTgtatgatatt ... tctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
EST: gi|16105068|gb|BI892808.1|BI892808
EST:     AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT                         GATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
genomic: AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTTgtatgatatt ... tctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
EST: gi|254329934|gb|GR839487.1|GR839487
EST:     AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT                         GATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
genomic: AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTTgtatgatatt ... tctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
EST: gi|27426195|gb|CA937715.1|CA937715
EST:     AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT                         GATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
genomic: AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTTgtatgatatt ... tctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
EST: gi|6951274|gb|AW423403.1|AW423403
EST:     AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT                         GATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
genomic: AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTTgtatgatatt ... tctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
EST: gi|20811622|gb|BQ296100.1|BQ296100
EST:     AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT                         GATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT
genomic: AAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTTgtatgatatt ... tctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacattctttaaccactaatttatatattgtttctgctgtctttctgctttagGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA
               cactaat  putative branch site (score: 2)
                                tttctgctgtctttct  putative PPT
         tttaaccactaattta  TA-rich tract