Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatgctgctacagaaattatgttctgatatatatttaatgctagcattaattttacatactattactcaagtggttttcttttccttctatgattatgtatacctggaagacaagaataacagattggaattgtctgatgtttcttctcatagGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAG

Basic information

species Glycine max
transcript GLYMA17G04180.1
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04180.1 (Glycine max), 3'ss of exon 24
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 3'ss of exon 25
gtgaatgctgctacagaaattatgttctgatatatatttaatgctagcattaattttacatactattactcaagtggttttcttttccttctatgattatgtatacctggaagacaagaataacagattggaattgtctgatgtttcttctcatagGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAG
                                                     |  |   | ||   | |    | | | | ||||  |||||   ||   | | |||      |||   ||  | ||| |  |||| |||    | |||  |||||||| | |||| |||   ||||||| | |||||||| ||||||||||| |||||||| ||||||||  |||||||||| || || | |||
----------------------------------------------------gtaattggtccttcaaattcgtttgctatgttttttttctagatttcctttttcctttt---caactttatgaaatttg--ttgtttgac---tgttcatatagGGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGACCGGTTACCAACATCTGCTACTTGCATGAATCTCTTAAAGCTTCCACCATACAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406815|gb|EV276630.1|EV276630
EST:     GGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGC
EST: gi|31464398|gb|CD406426.1|CD406426
EST:     GGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACCAAG                         GGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGC
EST: gi|58020074|gb|CX706816.1|CX706816
EST:     GGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacctggaagacaagaataacagattggaattgtctgatgtttcttctcatagGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAG
                                        tgtttcttctc  CT-rich tract
              aagaataa  TA-rich tract