1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtatatatcttgctaataacatcgttatcttgatttcgcagaagtcacattgcgattttcctgaagctgactttatggtattgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAGTGGGGTTGGATGGTGTGGCGATTTTGATATGGCCTAGCTGACATTTCA
species | Glycine max |
transcript | GLYMA17G02640.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GG-AAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|207791351|gb|GD760962.1|GD760962
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: TGACTATTTGAGCTCG GGGAAGAAGAAAAAGTAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|23734541|gb|BU765507.1|BU765507
genomic: TGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|13790494|gb|BG653094.1|BG653094
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|6718901|gb|AW306548.1|AW306548
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|208299891|gb|GE099670.1|GE099670
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|31472420|gb|CD414448.1|CD414448
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|31468447|gb|CD410475.1|CD410475
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|193645408|gb|FK590824.1|FK590824
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTT-GGGAAEST: gi|207729464|gb|GD705932.1|GD705932
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAA-GAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGAACGTAATGCCCTATATTTTTCTTTGGGAEST: gi|208060844|gb|GD858754.1|GD858754
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGG-ACGT-ATGCCCTATATTTTTCTTTGGGA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|9984215|gb|BE658323.1|BE658323
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAEST: gi|5666945|gb|AI930981.1|AI930981
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
ttcgcagaagtcacattgcgattttcctgaagctgactttatggtattgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAGTGGGGTTGGATGGTGTGGCGATTTTGATATGGCCTAGCTGACATTTCA
agctgac putative branch site (score: 3)
actttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatcttgctaataacatcgttatcttgatttcgcagaagtcacattgcgattttcctgaagctgactttatggtattgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAAGTGGGGTTGGATGGTGTGGCGATTTTGATATGGCCTAGCTGACATTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA