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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatacttactaaatgtgttatattccttgttgattacatagtttcttgctgcgttttttattaaagcagttcatgctattgtggcagGGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGGGGTTGTTGGGTTTTAAAAGCCTTGGTGATTTTGATGTGGCCCGGACATG

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331884|gb|GR846194.1|GR846194
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGG
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtaagcatac ... attgtggcagGGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGG
EST: gi|24136997|gb|BU927507.1|BU927507
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtaagcatac ... attgtggcagGGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAA
EST: gi|31306969|gb|CD392172.1|CD392172
EST:     TCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGG
genomic: TCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtaagcatac ... attgtggcagGGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGG
EST: gi|298166870|gb|HO010309.1|HO010309
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCG
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtaagcatac ... attgtggcagGGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCG
EST: gi|207804804|gb|GD779055.1|GD779055
EST:     GATTATGCAAGCACG                         GGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGG
genomic: GATTATGCAAGCACGgtaagcatac ... attgtggcagGGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attacatagtttcttgctgcgttttttattaaagcagttcatgctattgtggcagGGGAAAAGAAGAAAATAAATGAACATATGTTCTATATTGCGTAGGATAAGGGGTTGTTGGGTTTTAAAAGCCTTGGTGATTTTGATGTGGCCCGGACATG
 tgttgat  putative branch site (score: 4)
                     ttttttattaaagca  TA-rich tract