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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaataattttctttgtctttgtctttgttattgcagtctaagtctactattgcatttgtggtgtatctaacacatggacattttacagTCATCTTAGAACACTTTGATCAAGTAGTGGGAGACTGTTTCATGGATTGCGTGAATTGTCTGATCAGGTTTGCCAACAATAAAACTTCACATCGTATTAG

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 24
lower sequence: AT3G43300.1 (Arabidopsis thaliana), 3'ss of exon 23
--------------gtaagaataattttctt-tgtctttgtctttgttattgcagtctaagtctactattgcatttgtggtgtatctaacacatggacattttacagTCATCTTAGAACACTTTGATCAAGTAGTGGGAGACTGTTTCATGGATTGCGTGAATTGTCTGATCAGGTTTGCCAACAATAAAACTTCACATCGTATTAG
               | | | || |   ||| | ||  ||| ||  | | |    ||| | |||    ||    |    || | | ||||   | |    ||| |||| ||  | ||||||||||| || ||  | || ||||| ||||||||||| || |||||||| |||||||||||||| || ||| ||||| | || || ||
gtgacaaacagtccatcaaactattgcacttgtatccctgttttactcaattt--tctcactctttcgttttgataaatgtttgtgtaaccactcgtttgtttgcagTTATTCTGGAACACTTTGACCAGGTGATAGGTGACTGCTTCATGGATTGTGTCAATTGTCTCATCAGGTTTGCCAATAACAAAGCTTCAGACCGGATAAG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 24
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 3'ss of exon 23
gtaagaataattttctttgtctttgtctttgttattgcagtctaagtctactattgcatttgtggtgtatctaacacatggacattttacagTCATCTTAGAACACTTTGATCAAGTAGTGGGAGACTGTTTCATGGATTGCGTGAATTGTCTGATCAGGTTTGCCAACAATAAAACTTCACATCGTATTAG-------------------------------------------------
                 | ||  ||| ||  | | |    ||| | |||    ||    |    || | | ||||   | |    ||| |||| ||  | ||||||||||| || ||  | || ||||| ||||||||||| || |||||||| |||||||||||||| || ||| ||||| | || || ||                                                 
----------------gtatccctgttttactcaattt--tctcactctttcgttttgataaatgtttgtgtaaccactcgtttgtttgcagttattctggaacactttgaccaggtgataggtgactgcttcatggattgtgtcaattgtctcatcagGTTTGCCAATAACAAAGCTTCAGACCGGATAAGCCTGAAAGCTATTGCCCTTCTCAGAATATGTGAGGATCGGCTTGCAGAG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 24
lower sequence: PP1S382_36V6.1 (Physcomitrella patens), 3'ss of exon 15
gtaagaataattttctttgtctttgtctttgttattgcagtctaagtctactattgcatttgtggtgtatctaacaca--tggacattttacagTCATCTTAGAACACTTTGATCAAGTAGTGGGAGACTGTTTCATGGATTGCGTGAATTGTCTGATCAGGTTTGCCAACAATAAAACTTCACATCGTATTAG
                                   ||  |   |       |  ||  | || || ||   |  |     |||   |  | ||||  |  | |||||||||||||| || |||||||| || |||||||| |||||||                                              
----------------------------------gtgtggaggaga--agatggtgggtctgaggggttgttttctgggttgggtttggtgcagTTGTGCTGGAACACTTTGATCAGGTGGTGGGAGATTGCTTCATGGACTGCGTGA----------------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtctaagtctactattgcatttgtggtgtatctaacacatggacattttacagTCATCTTAGAACACTTTGATCAAGTAGTGGGAGACTGTTTCATGGATTGCGTGAATTGTCTGATCAGGTTTGCCAACAATAAAACTTCACATCGTATTAG
                               atctaac  putative branch site (score: 2)
                                            acatttta  TA-rich tract