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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatctaatctatattatttttaaaatgagtttgttaaatttgtttaatatattaggtaaaggaagacattagaatatgtttatgatattcttctatttggattttaacatttaccttatgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA

Basic information

species Glycine max
transcript GLYMA11G38160.1
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 24
lower sequence: GRMZM2G060045_T01 (Zea mays), 3'ss of exon 22
gtatgtaaatctaatctatattatttttaaaatgagtttgttaaatttgtttaatatattaggtaaaggaagacattagaatat--gtttatgatattcttctatttggattttaacatttaccttatgttctta--agGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA
                                                        |||||  |    ||  ||||     | |   ||| |  |  | | |  | |  | |  ||  |  | ||  |  | ||   |||| || ||||| |||||| | ||||| |||||||||||||||||||| |||||
---------------------------------------------------gtcggtattaactggcagagcacatctatttgttcctttttcgttctatacgctattaagtgaaaagtcaatctcttccttttgctagGCTCGTTTGTTTTTCCATCATCCTAAGTTTGGTATCCTGGACGAGTGCACCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193671127|gb|FK613249.1|FK613249
EST:     TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATG                         GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
genomic: TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGgtatgtaaat ... tgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
EST: gi|18712534|gb|BM522649.1|BM522649
EST:     TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATG                         GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
genomic: TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGgtatgtaaat ... tgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
EST: gi|7234108|gb|AW569448.1|AW569448
EST:     TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATG                         GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
genomic: TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGgtatgtaaat ... tgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACC
EST: gi|8404009|gb|BE059643.1|BE059643
EST:     TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATG                         GCACGCTTGTTCTTC
genomic: TAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGgtatgtaaat ... tgttcttaagGCACGCTTGTTCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtttatgatattcttctatttggattttaacatttaccttatgttcttaagGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA
                            ttttaac  putative branch site (score: 2)
                                             tgttctt  putative PPT
                           attttaacattta  TA-rich tract