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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggtctggaaaaaaattcattttttttttacttctgtttcattgttaagaatagacattgatttatttgtttgatgcatcaatatctttcatatggacagCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAACTACAAGTGCCCTTATTGTGAAATTTTGAGGGGTGAATTCCATTATCAG

Basic information

species Glycine max
transcript GLYMA11G02580.1
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408906|gb|EV278714.1|EV278714
EST:     GATGATTCTGAAAATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTG                         CTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
genomic: GATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGgtaaagtact ... atatggacagCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
EST: gi|16105685|gb|BI893425.1|BI893425
EST:     GATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTG                         CTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
genomic: GATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGgtaaagtact ... atatggacagCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
EST: gi|192331355|gb|FK019644.1|FK019644
EST:     GATGATTCTGAAAATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTG                         CTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
genomic: GATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGgtaaagtact ... atatggacagCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
EST: gi|7795142|gb|AW780539.1|AW780539
EST:     GAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTG                         CTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
genomic: GAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGgtaaagtact ... atatggacagCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
EST: gi|193577209|gb|FK534248.1|FK534248
EST:     GATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTG                         CTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA
genomic: GATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGgtaaagtact ... atatggacagCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaatagacattgatttatttgtttgatgcatcaatatctttcatatggacagCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAACTACAAGTGCCCTTATTGTGAAATTTTGAGGGGTGAATTCCATTATCAG
                                       tctttcat  CT-rich tract
           attgatttatttgttt  TA-rich tract