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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtcatttttaaagttaccctggattattctaaatttagaatttgctaataatccttcttatactttttgttgaatactaacattatcttcatgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCAGTTTGCTTTAGGACTGTCGGACGGTGGAGTTCATGTTTTTGAACCCCTT

Basic information

species Glycine max
transcript GLYMA08G22910.1
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427240|gb|CA938760.1|CA938760
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|23725389|gb|BU760648.1|BU760648
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|208317228|gb|GE113237.1|GE113237
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|6963505|gb|AW432198.1|AW432198
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|10845152|gb|BF068313.1|BF068313
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTA-TCGCT
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCT
EST: gi|15812260|gb|BI784535.1|BI784535
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|11687500|gb|BF595176.1|BF595176
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|7233186|gb|AW568535.1|AW568535
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|151396060|gb|EV265937.1|EV265937
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTAGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|15201627|gb|BI424973.1|BI424973
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|26048827|gb|CA785280.1|CA785280
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATTGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|48574833|gb|CO036100.1|CO036100
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaataatccttcttatactttttgttgaatactaacattatcttcatgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCAGTTTGCTTTAGGACTGTCGGACGGTGGAGTTCATGTTTTTGAACCCCTT
                              tactaac  putative branch site (score: 0)
                                      ttatcttc  CT-rich tract
          ttcttatacttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtcatttttaaagttaccctggattattctaaatttagaatttgctaataatccttcttatactttttgttgaatactaacattatcttcatgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCAGTTTGCTTTAGGACTGTCGGACGGTGGAGTTCATGTTTTTGAACCCCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG