1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' |
gtatctgaattttcttttggtatcctgtacttgtgcctgtgacttgcaagtgttgtatttgatgattgtttttatatgttttgaaacttctatagGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTGTGAAGTACTCCATAGTTGAGCGTCCAGAGAAGATAGATGAGATCATAT
species | Glycine max |
transcript | GLYMA07G40230.2 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAG GTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTEST: gi|208298167|gb|GE091058.1|GE091058
genomic: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAGgtatctgaat ... acttctatagGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCT
EST: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAG GTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTEST: gi|151410822|gb|EV280637.1|EV280637
genomic: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAGgtatctgaat ... acttctatagGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCT
EST: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAG GTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTEST: gi|13789058|gb|BG651649.1|BG651649
genomic: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAGgtatctgaat ... acttctatagGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCT
EST: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAG GTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCT
genomic: TGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAGgtatctgaat ... acttctatagGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCT
gacttgcaagtgttgtatttgatgattgtttttatatgttttgaaacttctatagGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTGTGAAGTACTCCATAGTTGAGCGTCCAGAGAAGATAGATGAGATCATAT
atttgat putative branch site (score: 5)
cttctat putative PPT
tatttgatgattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctgaattttcttttggtatcctgtacttgtgcctgtgacttgcaagtgttgtatttgatgattgtttttatatgttttgaaacttctatagGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTGTGAAGTACTCCATAGTTGAGCGTCCAGAGAAGATAGATGAGATCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA