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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatgctgctacagaaattatgttctgatatttatttaatgctagcattaattttacacactattactcaagtggttttctttttcttctatgattatgtatatctggaagacaagaataacagattggaattgtctgatgtttcttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAG

Basic information

species Glycine max
transcript GLYMA07G36390.1
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36390.1 (Glycine max), 3'ss of exon 24
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 3'ss of exon 25
gtgaatgctgctacagaaattatgttctgatatttatttaatgctagcattaattttacacactattactcaagtggttttctttttcttctatgattatgtatatctggaagacaagaataacagattggaattgtctgatgtttcttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAG
                                                     |  |     ||   | |    | | | | ||||| |||||   ||   | |  ||      |||   ||  | ||| |  |||| |||    | |||  |||||||| | |||| |||  |||| ||| | |||||||| ||||||||||| |||||||| ||||||||  |||||||||| || || | |||
----------------------------------------------------gtaattggtccttcaaattcgtttgctatgttttttttctagatttcctttttcctttt---caactttatgaaatttg--ttgtttgac---tgttcatatagGGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGACCGGTTACCAACATCTGCTACTTGCATGAATCTCTTAAAGCTTCCACCATACAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004710|gb|DB988996.1|DB988996
EST:     GGCCATTGCTT-GATCCACGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGCCATTGCTTGGTTTC-CGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|254336986|gb|GR843165.1|GR843165
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|16343557|gb|BI969152.1|BI969152
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|193548679|gb|FK505798.1|FK505798
EST:     ATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: ATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|208195226|gb|GD990427.1|GD990427
EST:     GGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|6746651|gb|AW317169.1|AW317169
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|6667616|gb|AW279067.1|AW279067
EST:     ATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: ATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|10255001|gb|BE822767.1|BE822767
EST:     GATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|6913262|gb|AW394792.1|AW394792
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|151405150|gb|EV274964.1|EV274964
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGG
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGG-TAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatctggaagacaagaataacagattggaattgtctgatgtttcttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAG
                                        tgtttcttctc  CT-rich tract
              aagaataa  TA-rich tract