Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcacctatgccttaaaattttgaaactggcttatatagtaattctaatactaacaatgattttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAATCCAGATTACAGGGAAGAGTGAGAACCACGGTAGTGATGCTTTTTTCTT

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31462296|gb|CD404324.1|CD404324
EST:     ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAA                         ATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
EST: gi|193697944|gb|FK635711.1|FK635711
EST:     ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAA                         ATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
EST: gi|193305137|gb|FK271264.1|FK271264
EST:     ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAA                         -TACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
EST: gi|46492855|gb|CN472411.1|CN472411
EST:     ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAA                         ATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
EST: gi|120492692|gb|EH220859.1|EH220859
EST:     ACCCCTGTTCTCCTGGCTGCTGNGGACAGGGCTGAGCTGGCAACGGANAA                         ATACATTCCCCTATCACCAATT
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATT
EST: gi|6747639|gb|AW318152.1|AW318152
EST:     ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAA                         ATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
EST: gi|120530034|gb|EH258168.1|EH258168
EST:     ACCC-TGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGGAACGGAAAA                         -TACATTCCC-TATAAC-AATTCT-GAAGGTT
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTT
EST: gi|208276056|gb|GE080286.1|GE080286
EST:     TGAGCTGGCAACGGAAAA                         ATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: TGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
EST: gi|10237376|gb|BE806264.1|BE806264
EST:     ACCCCTTTTCTCCTGGCTGCTTGGGACAGGGCTGAGCTGGCAACGGAAAA                         ATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
EST: gi|42722474|gb|CK768373.1|CK768373
EST:     ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAA                         ATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA
genomic: ACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCTGAGCTGGCAACGGAAAAgtaattcacc ... ttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaaactggcttatatagtaattctaatactaacaatgattttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAATCCAGATTACAGGGAAGAGTGAGAACCACGGTAGTGATGCTTTTTTCTT
                               tactaac  putative branch site (score: 0)
                                           ttttttcttc  putative PPT
              ttatatagtaattcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattcacctatgccttaaaattttgaaactggcttatatagtaattctaatactaacaatgattttttcttcagATACATTCCCCTATCACCAATTCTTGAAGGTTTCGTAATTTTGAAGGAGAATCCAGATTACAGGGAAGAGTGAGAACCACGGTAGTGATGCTTTTTTCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA