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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtattctgcattatgtacatggtgaactttgggtttattttgtggcaaatatgttatttctttgatggcttgttatttctgatcatgcaatcatagattcatctttcctgttggttttgcagGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT

Basic information

species Glycine max
transcript GLYMA17G05410.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105068|gb|BI892808.1|BI892808
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattc ... ggttttgcagGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
EST: gi|254329934|gb|GR839487.1|GR839487
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattc ... ggttttgcagGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
EST: gi|27426195|gb|CA937715.1|CA937715
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattc ... ggttttgcagGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
EST: gi|6951274|gb|AW423403.1|AW423403
EST:     TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTG                         GTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
genomic: TCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGgtacgtattc ... ggttttgcagGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAAC
EST: gi|20811622|gb|BQ296100.1|BQ296100
EST:     CCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTGC-TGATA-TG                         GTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAA
genomic: CCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGA-AGTGgtacgtattc ... ggttttgcagGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgttatttctgatcatgcaatcatagattcatctttcctgttggttttgcagGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTT
         ttctgat  putative branch site (score: 3)
     ttatttct  TA-rich tract