1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...tttattaacttagtcatctatggatagatgagttttttaaaatcaggtttgtgaatcccattcttttgtcgagctaaattgatgtttggtggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGCTTTATTTACAGAATTCATCAACAAGAACAATACTTTTCAAGCCAATAA
species | Glycine max |
transcript | GLYMA17G04990.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGEST: gi|22931215|gb|BU548354.1|BU548354
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGEST: gi|254339788|gb|GR857913.1|GR857913
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTC-AAA- ---AGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGEST: gi|208050427|gb|GD845538.1|GD845538
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: AGGTGGCTGAACTTGTTCAAAAG GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGEST: gi|193730769|gb|FK666905.1|FK666905
genomic: AGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGEST: gi|193614960|gb|FK564678.1|FK564678
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGEST: gi|207696228|gb|GD677751.1|GD677751
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: TGAACTTGTTCAAAAG GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGEST: gi|193301547|gb|FK267728.1|FK267728
genomic: TGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: TGAACTTGTTCAAAAG GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: TGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
ggtttgtgaatcccattcttttgtcgagctaaattgatgtttggtggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGCTTTATTTACAGAATTCATCAACAAGAACAATACTTTTCAAGCCAATAA
taaattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattaacttagtcatctatggatagatgagttttttaaaatcaggtttgtgaatcccattcttttgtcgagctaaattgatgtttggtggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAGCTTTATTTACAGAATTCATCAACAAGAACAATACTTTTCAAGCCAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - gtttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttg